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This site is for archival purposes and may eventually be deleted.
iRefWeb LinkOut Generator
From Donaldson Group
The NCBI services offer a mechanism through which external providers can submit links to their own services which then appear in certain records retrieved from the NCBI services concerned. The script and templates supplied here provide a means of generating the files which describe iRefWeb as a provider (providerinfo.xml) along with the Entrez Gene records that should be decorated with links to iRefWeb pages (resources.xml).
Obtaining the Generator
The tools and resources used to generate LinkOut-related files can be obtained here:
- File:iRefWeb-LinkOut-2011-02-23.tar.bz2 (iRefWeb LinkOut Generator, snapshot 2011-02-23)
The following programs are required to use the parser:
- Python (tested with 2.5.4)
Running the Generator
Given a file containing a list of gene identifiers, one per line, the following command will process this file (called genes.txt, for example) with a provider identification number of 7777:
python make_linkout.py genes.txt resources.xml providerinfo.xml 7777
More information is provided in the README.txt file supplied with the software.
All iRefIndex Pages
Follow this link for a listing of all iRefIndex related pages (archived and current).